|
|
| -Genomic Data |
Links |
- Protein
- Myf6
|
- UniPROBE Accession Number
- UP00036
|
- Species
- Mus musculus
|
- Domain
- BASIC, HLH
|
- Uniprot
-
P15375
|
- Name and Synonyms
-
myogenic factor 6
herculin, Herculin, MRF4, Myf-6, Myogenic factor 6
|
- IHOP
-
123007
|
- RefSeq
-
NP_032683
|
- Description
- None Available
|
- JASPAR
-
N/A
|
| -PBM Motif Data for Myf6 |
- Primary Motif (Seed-And-Wobble)
-
|
- Primary PWM
-
View
Save
|
- Top Kmer
-
AACAG.TG.C E.S. 0.494
G.CA.CTGTT E.S. 0.494
|
- Secondary Motif (Seed-And-Wobble)
-
|
- Secondary PWM
-
View
Save
|
- Top Kmer
-
AACAG.CGC E.S. 0.455
GCG.CTGTT E.S. 0.455
|
-
Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH3824)
-
|
- PWM
-
View
|
- Consensus
-
RDCADNYGNN
NNCRNHTGHY
|
-
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH3824)
-
|
- PWM
-
View
|
- Consensus
-
NNNNNTGNBN
NVNCANNNNN
|
- Downloads
-
Download the
zip
of all Myf6 PBM files
or view the
downloads directory
for individual files.
|
- Link to TFBSshape
-
This link will take you to the corresponding entry for Myf6
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=36&sourceDB=uniprobe
|
| -Myf6 Datasets |
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
|
pTH3824 |
#1 |
AMADID #016060 |
E. coli |
DNA binding domain only |
2014-08-13 |
|
|
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
|
pTH3824 |
#1 |
AMADID #015681 |
E. coli |
DNA binding domain only |
2014-08-13 |
|
|
- Clone pTH3824 insert sequence
- 1 MMMDLFETGS YFFYLDGENV TLQPLEVAEG SPLYPGSDGT LSPCQDQMPQ
51 EAGSDSSGEE HVLAPPGLQP PHCPGQCLIW ACKTCKRKSA PTDRRKAATL
101 RERRRLKKIN EAFEALKRRT VANPNQRLPK VEILRSAISY IERLQDLLHR
151 LDQQEKMQEL GVDPYSYKPK QEILEGADFL RTCSPQWPSV SDHSRGLVIT
201 AKEGGANVDA SASSSLQRLS SIVDSISSEE RKLPSVEEVV EK
- DNA Binding Domains (Pfam) for clone 3824
-
Region 3..93
1 MDLFETGSYF FYLDGENVTL QPLEVAEGSP LYPGSDGTLS PCQDQMPQEA
51 GSDSSGEEHV LAPPGLQPPH CPGQCLIWAC KTCKRKSAPT D
-
-
Region 94..145
1 RRKAATLRER RRLKKINEAF EALKRRTVAN PNQRLPKVEI LRSAISYIER
51 LQ
|
- References
-
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
|
|