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| -Genomic Data |
Links |
- Protein
- Spdef
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- UniPROBE Accession Number
- UP00038
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- Species
- Mus musculus
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- Domain
- ETS
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- Uniprot
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Q9WTP3
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- Name and Synonyms
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SAM pointed domain containing ets transcription factor
Pdef, PDEF, Prostate-derived Ets factor, Prostate epithelium-specific Ets transcription factor, Prostate-specific Ets, Pse, SAM pointed domain-containing Ets transcription factor
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- IHOP
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127351
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- RefSeq
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NP_038919
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- Description
- Mus musculus prostate specific ets transcription factor (Pse-pending), mRNA
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- JASPAR
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N/A
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| -PBM Motif Data for Spdef |
- Primary Motif (Seed-And-Wobble)
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- Primary PWM
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View
Save
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- Top Kmer
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A.ATCCGG.T E.S. 0.494
A.CCGGAT.T E.S. 0.494
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- Secondary Motif (Seed-And-Wobble)
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- Secondary PWM
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View
Save
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- Top Kmer
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A.ATCCTA.T E.S. 0.472
A.TAGGAT.T E.S. 0.472
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Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH0905)
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- PWM
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View
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- Consensus
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DNVMGGAHNH
DNDTCCKBNH
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Motif (BEEML-PBM) (AMADID # 016060) (clone pTH0905)
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- PWM
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View
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- Consensus
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DNDTCCKBNN
NNVMGGAHNH
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- Downloads
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Download the
zip
of all Spdef PBM files
or view the
downloads directory
for individual files.
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- Link to TFBSshape
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This link will take you to the corresponding entry for Spdef
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=38&sourceDB=uniprobe
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| -Spdef Datasets |
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH905 |
#1 |
AMADID #016060 |
E. coli |
DNA binding domain only |
2014-08-13 |
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| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH905 |
#1 |
AMADID #015681 |
E. coli |
DNA binding domain only |
2014-08-13 |
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- Clone pTH905 insert sequence
- 1 EGWTDGEVDS SCSGQPIHLW QFLKELLLKP HSYGRFIRWL NKEKGIFKIE
51 DSAQVARLWG VRKNRPAMNY DKLSRSIRQY YKKGIIRKPD ISQRLVYQFV
101 HPV
- DNA Binding Domains (Pfam) for clone 905
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Region 16..102
1 PIHLWQFLKE LLLKPHSYGR FIRWLNKEKG IFKIEDSAQV ARLWGVRKNR
51 PAMNYDKLSR SIRQYYKKGI IRKPDISQRL VYQFVHP
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- References
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Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
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