-Genomic Data Links
Protein
Irf5
UniPROBE Accession Number
UP00040
Species
Mus musculus
Domain
IRF
Name and Synonyms
interferon regulatory factor 5
AW491843, Interferon regulatory factor 5, IRF-5, mirf5
Description
None Available
-PBM Motif Data for Irf5
Primary Motif (Seed-And-Wobble)
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Primary PWM
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Top Kmer
A.CGAAACC E.S. 0.498
GGTTTCG.T E.S. 0.498
Secondary Motif (Seed-And-Wobble)
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Secondary PWM
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Top Kmer
A.CGAGAAT E.S. 0.479
ATTCTCG.T E.S. 0.479
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH3874)
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PWM
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Consensus
YWCGRRYNVN
NBNRYYCGWR
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH3874)
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PWM
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Consensus
NNNHGADASH
DSTHTCDNNN
Downloads
Download the zip of all Irf5 PBM files or view the downloads directory for individual files.
Link to TFBSshape
This link will take you to the corresponding entry for Irf5 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=40&sourceDB=uniprobe

-Irf5 Datasets
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH3874 #1 AMADID #016060 IVT DNA binding domain only 2014-08-13 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH3874 #1 AMADID #015681 IVT DNA binding domain only 2014-08-13 save search
Clone pTH3874 insert sequence
1    NHSAPGIPPP PRRVRLKPWL VAQVNSCQYP GLQWVNGEKK LFYIPWRHAT
51   RHGPSQDGDN TIFKAWAKET GKYTEGVDEA DPAKWKANLR CALNKSRDFQ
101  LFYDGPRDMP PQPYKIYEVC SNGPAPTESQ PTDDYVL

DNA Binding Domains (Pfam) for clone 3874
Region 13..122
1    RVRLKPWLVA QVNSCQYPGL QWVNGEKKLF YIPWRHATRH GPSQDGDNTI
51   FKAWAKETGK YTEGVDEADP AKWKANLRCA LNKSRDFQLF YDGPRDMPPQ
101  PYKIYEVCSN
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


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