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| -Genomic Data |
Links |
- Protein
- Rara
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- UniPROBE Accession Number
- UP00048
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- Species
- Mus musculus
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- Domain
- ZnF_C4
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- Uniprot
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P11416
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- Name and Synonyms
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retinoic acid receptor, alpha
Nr1b1, RAR, RAR-alpha, RARalpha1, RAR alpha 1, Retinoic acid receptor alpha
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- IHOP
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123960
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- RefSeq
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NP_033050
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- Description
- None Available
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- JASPAR
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N/A
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| -PBM Motif Data for Rara |
- Primary Motif (Seed-And-Wobble)
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- Primary PWM
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View
Save
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- Top Kmer
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AAAGGTCA E.S. 0.496
TGACCTTT E.S. 0.496
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- Secondary Motif (Seed-And-Wobble)
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- Secondary PWM
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View
Save
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- Top Kmer
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CGGGGTCA E.S. 0.486
TGACCCCG E.S. 0.486
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Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH1051)
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- PWM
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View
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- Consensus
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NNTGACCYNN
NNRGGTCANN
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Motif (BEEML-PBM) (AMADID # 016060) (clone pTH1051)
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- PWM
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View
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- Consensus
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NNTGACCYNN
NNRGGTCANN
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- Downloads
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Download the
zip
of all Rara PBM files
or view the
downloads directory
for individual files.
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- Link to TFBSshape
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This link will take you to the corresponding entry for Rara
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=48&sourceDB=uniprobe
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| -Rara Datasets |
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH1051 |
#1 |
AMADID #015681 |
E. coli |
DNA binding domain only |
2014-08-13 |
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| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH1051 |
#1 |
AMADID #016060 |
E. coli |
DNA binding domain only |
2014-08-13 |
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- Clone pTH1051 insert sequence
- 1 EIVPSPPSPP PLPRIYKPCF VCQDKSSGYH YGVSACEGCK GFFRRSIQKN
51 MVYTCHRDKN CIINKVTRNR CQYCRLQKCF DVGMSKESVR NDRNKKKKEA
101 PKPECSE
- DNA Binding Domains (Pfam) for clone 1051
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Region 17..92
1 KPCFVCQDKS SGYHYGVSAC EGCKGFFRRS IQKNMVYTCH RDKNCIINKV
51 TRNRCQYCRL QKCFDVGMSK ESVRND
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- References
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Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
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