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| -Genomic Data |
Links |
- Protein
- Hbp1
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- UniPROBE Accession Number
- UP00055
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- Species
- Mus musculus
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- Domain
- HMG_box
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- Uniprot
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Q8R316
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- Name and Synonyms
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high mobility group box transcription factor 1
1700058O05Rik, BE629963, C330012F01Rik, C86454, High mobility group box transcription factor 1, HMG box-containing protein 1, HMG box transcription factor 1
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- IHOP
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137669
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- RefSeq
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NP_694878
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- Description
- None Available
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- JASPAR
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N/A
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| -PBM Motif Data for Hbp1 |
- Primary Motif (Seed-And-Wobble)
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- Primary PWM
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View
Save
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- Top Kmer
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TGAATGAA E.S. 0.495
TTCATTCA E.S. 0.495
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- Secondary Motif (Seed-And-Wobble)
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- Secondary PWM
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View
Save
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- Top Kmer
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CCATTGT..A E.S. 0.444
T..ACAATGG E.S. 0.444
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Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH2241)
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- PWM
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View
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- Consensus
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NNNNWAWNDN
NHNWTWNNNN
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Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2241)
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- PWM
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View
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- Consensus
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NNNNDDNNDN
NHNNHHNNNN
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- Downloads
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Download the
zip
of all Hbp1 PBM files
or view the
downloads directory
for individual files.
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- Link to TFBSshape
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This link will take you to the corresponding entry for Hbp1
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=55&sourceDB=uniprobe
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| -Hbp1 Datasets |
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH2241 |
#1 |
AMADID #016060 |
IVT |
DNA binding domain only |
2014-08-13 |
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| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH2241 |
#1 |
AMADID #015681 |
E. coli |
DNA binding domain only |
2014-08-13 |
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- Clone pTH2241 insert sequence
- 1 VKSHSSGTVS ATSPNKCKRP MNAFMLFAKK YRVEYTQMYP GKDNRAISVI
51 LGDRWKKMKN EERRMYTLEA KALAEEQKRL NPDCWKRKRT NSGSQQH
- DNA Binding Domains (Pfam) for clone 2241
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Region 17..86
1 CKRPMNAFML FAKKYRVEYT QMYPGKDNRA ISVILGDRWK KMKNEERRMY
51 TLEAKALAEE QKRLNPDCWK
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- References
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Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
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