Protein Details

-Genomic Data				Links
Protein Rfx4	UniPROBE Accession Number UP00056	Species Mus musculus	Domain RFX	Uniprot Q8HWA6
Name and Synonyms regulatory factor X, 4 (influences HLA class II expression) 4933412G19Rik, NYD-sp10				IHOP 136103
				RefSeq NP_081965
Description None Available				JASPAR N/A

-PBM Motif Data for Rfx4
Primary Motif (Seed-And-Wobble)				Primary PWM View Save
Primary Motif (Seed-And-Wobble)				Top Kmer C.TAGCAAC E.S. 0.499 GTTGCTA.G E.S. 0.499
Secondary Motif (Seed-And-Wobble)				Secondary PWM View Save
Secondary Motif (Seed-And-Wobble)				Top Kmer C.TGGTTAC E.S. 0.497 GTAACCA.G E.S. 0.497
Motif (BEEML-PBM) (AMADID # 015681) (clone pTH3761)				PWM View
Motif (BEEML-PBM) (AMADID # 015681) (clone pTH3761)				Consensus NSNNRRHDAC GTHDYYNNSN
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH3761)				PWM View
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH3761)				Consensus NCNHRRYDAC GTHRYYDNGN
Downloads Download the zip of all Rfx4 PBM files or view the downloads directory for individual files.
Link to TFBSshape This link will take you to the corresponding entry for Rfx4 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites. http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=56&sourceDB=uniprobe

-Rfx4 Datasets
Clone ID	Expression	Array Version	Expression Protocol	Clone Type	Last Modified	Save	View
pTH3761	#1	AMADID #016060	IVT	DNA binding domain only	2014-08-13
Clone ID	Expression	Array Version	Expression Protocol	Clone Type	Last Modified	Save	View
pTH3761	#1	AMADID #015681	IVT	DNA binding domain only	2014-08-13
Clone pTH3761 insert sequence `1 RYSSHTSLGN VSNDENEEKE NNRASKPHST PATLQWLEEN YEIAEGVCIP 51 RSALYMHYLD FCEKNDTQPV NAASFGKIIR QQFPQLTTRR LGTRGQSKYH 101 YYGIAVKESS QYY` DNA Binding Domains (Pfam) for clone 3761 Region 16..98 `1 NEEKENNRAS KPHSTPATLQ WLEENYEIAE GVCIPRSALY MHYLDFCEKN 51 DTQPVNAASF GKIIRQQFPQ LTTRRLGTRG QSK`
References `Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009`