Protein Details

-Genomic Data				Links
Protein Arid5a	UniPROBE Accession Number UP00059	Species Mus musculus	Domain BRIGHT	Uniprot Q8BI45
Name and Synonyms AT rich interactive domain 5A (Mrf1 like) D430024K22Rik, MGC36895, Mrf1				IHOP 151977
				RefSeq NP_666108
Description None Available				JASPAR N/A

-PBM Motif Data for Arid5a
Primary Motif (Seed-And-Wobble)				Primary PWM View Save
Primary Motif (Seed-And-Wobble)				Top Kmer AATATTG..A E.S. 0.486 T..CAATATT E.S. 0.486
Secondary Motif (Seed-And-Wobble)				Secondary PWM View Save
Secondary Motif (Seed-And-Wobble)				Top Kmer T..AATACGA E.S. 0.402 TCGTATT..A E.S. 0.402
Motif (BEEML-PBM) (AMADID # 015681) (clone pTH3770)				PWM View
Motif (BEEML-PBM) (AMADID # 015681) (clone pTH3770)				Consensus NNNRWATHNN NNDATWYNNN
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH3770)				PWM View
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH3770)				Consensus NNNNBNNNNN NNNNNVNNNN
Downloads Download the zip of all Arid5a PBM files or view the downloads directory for individual files.
Link to TFBSshape This link will take you to the corresponding entry for Arid5a in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites. http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=59&sourceDB=uniprobe

-Arid5a Datasets
Clone ID	Expression	Array Version	Expression Protocol	Clone Type	Last Modified	Save	View
pTH3770	#1	AMADID #016060	IVT	DNA binding domain only	2014-08-13
Clone ID	Expression	Array Version	Expression Protocol	Clone Type	Last Modified	Save	View
pTH3770	#1	AMADID #015681	IVT	DNA binding domain only	2014-08-13
Clone pTH3770 insert sequence `1 SRSQSPTQLQ DSPEAGGEQE EEQAFLVSLY KFMKERHTPI ERVPHLGFKQ 51 INLWKIYKAV EKLGAYELVT GRRLWKNVYD ELGGSPGSTS AATCTRRHYE 101 RLVLPYVRHL KGEDDKPLPP TKPRKQYKMA KELRGD` DNA Binding Domains (Pfam) for clone 3770 Region 16..121 `1 GGEQEEEQAF LVSLYKFMKE RHTPIERVPH LGFKQINLWK IYKAVEKLGA 51 YELVTGRRLW KNVYDELGGS PGSTSAATCT RRHYERLVLP YVRHLKGEDD 101 KPLPPT`
References `Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009`