-Genomic Data Links
Protein
Zic3
UniPROBE Accession Number
UP00006
Species
Mus musculus
Domain
zf-C2H2
Uniprot
Q62521
Name and Synonyms
zinc finger protein of the cerebellum 3
Zinc finger protein of the cerebellum 3, Zinc finger protein ZIC 3
IHOP
126080
RefSeq
NP_033601
Description
Mus musculus zinc finger protein of the cerebellum 3, mRNA (cDNA clone IMAGE:30112694), partial cds
JASPAR
N/A
-PBM Motif Data for Zic3
Primary Motif (Seed-And-Wobble)
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Primary PWM
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Top Kmer
CCCC..GGGG E.S. 0.494
CCCC..GGGG E.S. 0.494
Secondary Motif (Seed-And-Wobble)
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Secondary PWM
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Top Kmer
C.CAGCAGG E.S. 0.491
CCTGCTG.G E.S. 0.491
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH3119)
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PWM
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Consensus
NCMYVBNGNK
MNCNVBRKGN
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH3119)
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PWM
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Consensus
NCMYVBNRNB
VNYNVBRKGN
Downloads
Download the zip of all Zic3 PBM files or view the downloads directory for individual files.
Link to TFBSshape
This link will take you to the corresponding entry for Zic3 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=6&sourceDB=uniprobe

-Zic3 Datasets
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH3119 #1 AMADID #016060 E. coli DNA binding domain only 2014-08-13 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH3119 #1 AMADID #015681 E. coli DNA binding domain only 2014-08-13 save search
Clone pTH3119 insert sequence
1    PIKQELSCKW IEEAQLSRPK KSCDRTFSTM HELVTHVTME HVGGPEQNNH
51   VCYWEECPRE GKSFKAKYKL VNHIRVHTGE KPFPCPFPGC GKIFARSENL
101  KIHKRTHTGE KPFKCEFEGC DRRFANSSDR KKHMHVHTSD KPYICKVCDK
151  SYTHPSSLRK HMKVHESQGS DSSPAASSGY E

DNA Binding Domains (Pfam) for clone 3119
Region 50..77
1   HVCYWEECPR EGKSFKAKYK LVNHIRVH

Region 83..107
1   FPCPFPGCGK IFARSENLKI HKRTH

Region 113..137
1   FKCEFEGCDR RFANSSDRKK HMHVH

Region 143..165
1   YICKVCDKSY THPSSLRKHM KVH
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


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