-Genomic Data Links
Protein
Sox4
UniPROBE Accession Number
UP00062
Species
Mus musculus
Domain
HMG_box
Uniprot
Q06831
Name and Synonyms
SRY-box containing gene 4
AA682046, Sox-4, Transcription factor SOX-4
IHOP
124782
RefSeq
NP_033264
Description
Mus musculus BAC Clone 262c6 RPCI-23, complete sequence
JASPAR
N/A
-PBM Motif Data for Sox4
Primary Motif (Seed-And-Wobble)
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Primary PWM
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Top Kmer
AACAAAGG E.S. 0.491
CCTTTGTT E.S. 0.491
Secondary Motif (Seed-And-Wobble)
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Secondary PWM
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Top Kmer
AATTGTT..G E.S. 0.481
C..AACAATT E.S. 0.481
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH2941)
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PWM
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Consensus
NNNVACAAWD
HWTTGTBNNN
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2941)
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PWM
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Consensus
NSAGTVNNNN
NNNNBACTSN
Downloads
Download the zip of all Sox4 PBM files or view the downloads directory for individual files.
Link to TFBSshape
This link will take you to the corresponding entry for Sox4 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=62&sourceDB=uniprobe

-Sox4 Datasets
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH2941 #1 AMADID #016060 E. coli DNA binding domain only 2014-08-13 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH2941 #1 AMADID #015681 E. coli DNA binding domain only 2014-08-13 save search
Clone pTH2941 insert sequence
1    GGKADDPSWC KTPSGHIKRP MNAFMVWSQI ERRKIMEQSP DMHNAEISKR
51   LGKRWKLLKD SDKIPFIQEA ERLRLKHMAD YPDYKYRPRK KVKSGNAGAG
101  S

DNA Binding Domains (Pfam) for clone 2941
Region 17..85
1   IKRPMNAFMV WSQIERRKIM EQSPDMHNAE ISKRLGKRWK LLKDSDKIPF
51  IQEAERLRLK HMADYPDYK
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


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