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| -Genomic Data |
Links |
- Protein
- Hoxa3
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- UniPROBE Accession Number
- UP00063
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- Species
- Mus musculus
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- Domain
- Homeobox
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- Uniprot
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P02831
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- Name and Synonyms
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homeo box A3
Homeobox protein Hox-A3, Hox-1.5, Hoxa-3, Mo-10, MO-10
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- IHOP
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121728
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- RefSeq
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NP_034582
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- Description
- Mus musculus homeo box A3 (Hoxa3)
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- JASPAR
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None Available
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| -PBM Motif Data for Hoxa3 |
- Primary Motif (Seed-And-Wobble)
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- Primary PWM
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View
Save
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- Top Kmer
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G.G.TAATTA E.S. 0.494
TAATTA.C.C E.S. 0.494
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- Secondary Motif (Seed-And-Wobble)
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- Secondary PWM
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View
Save
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- Top Kmer
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AA.C.ATTAA E.S. 0.480
TTAAT.G.TT E.S. 0.480
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Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH2783)
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- PWM
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View
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- Consensus
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NNNYMATTAN
NTAATKRNNN
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Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2783)
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- PWM
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View
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- Consensus
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NTAATKRNNN
NNNYMATTAN
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- Downloads
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Download the
zip
of all Hoxa3 PBM files
or view the
downloads directory
for individual files.
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- Link to TFBSshape
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This link will take you to the corresponding entry for Hoxa3
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=63&sourceDB=uniprobe
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| -Hoxa3 Datasets |
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH2783 |
#1 |
AMADID #016060 |
E. coli |
DNA binding domain only |
2014-08-22 |
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| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH2783 |
#1 |
AMADID #015681 |
E. coli |
DNA binding domain only |
2014-08-22 |
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- Clone pTH2783 insert sequence
- 1 GESCAGDKSP PGQASSKRAR TAYTSAQLVE LEKEFHFNRY LCRPRRVEMA
51 NLLNLTERQI KIWFQNRRMK YKKDQKGKGM LTSSGGQSPS RSP
- DNA Binding Domains (Pfam) for clone 2783
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Region 17..73
1 KRARTAYTSA QLVELEKEFH FNRYLCRPRR VEMANLLNLT ERQIKIWFQN
51 RRMKYKK
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- References
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Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
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