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| -Genomic Data |
Links |
- Protein
- Zfp161
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- UniPROBE Accession Number
- UP00065
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- Species
- Mus musculus
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- Domain
- zf-C2H2
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- Uniprot
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Q08376
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- Name and Synonyms
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zinc finger protein 161
ZF5, Zfp-161, Zfp5, Zfp-5, Zinc finger protein 161, Zinc finger protein 5
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- IHOP
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126026
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- RefSeq
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NP_033573
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- Description
- Mus musculus zinc finger protein 161
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- JASPAR
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N/A
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| -PBM Motif Data for Zfp161 |
- Primary Motif (Seed-And-Wobble)
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- Primary PWM
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View
Save
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- Top Kmer
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G.GCGCGC.C E.S. 0.499
G.GCGCGC.C E.S. 0.499
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- Secondary Motif (Seed-And-Wobble)
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- Secondary PWM
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View
Save
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- Top Kmer
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CGCGCA..GC E.S. 0.480
GC..TGCGCG E.S. 0.480
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Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH2858)
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- PWM
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View
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- Consensus
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NNNCGYGCNN
NNGCRCGNNN
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Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2858)
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- PWM
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View
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- Consensus
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NNNCDCGNNN
NNNCGHGNNN
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- Downloads
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Download the
zip
of all Zfp161 PBM files
or view the
downloads directory
for individual files.
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- Link to TFBSshape
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This link will take you to the corresponding entry for Zfp161
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=65&sourceDB=uniprobe
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| -Zfp161 Datasets |
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH2858 |
#1 |
AMADID #016060 |
E. coli |
DNA binding domain only |
2014-08-13 |
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| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH2858 |
#1 |
AMADID #015681 |
E. coli |
DNA binding domain only |
2014-08-13 |
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- Clone pTH2858 insert sequence
- 1 DMKFEYLLYG HHREQIACQA CGKTFSDEGR LRKHEKLHTA DRPFVCEMCT
51 KGFTTQAHLK EHLKIHTGYK PYSCEVCGKS FIRAPDLKKH ERVHSNERPF
101 ACHMCDKAFK HKSHLKDHER RHRGEKPFVC GSCTKAFAKA SDLKRHENNM
151 HSERKQVTPS AIQSET
- DNA Binding Domains (Pfam) for clone 2858
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Region 16..38
1 IACQACGKTF SDEGRLRKHE KLH
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Region 44..66
1 FVCEMCTKGF TTQAHLKEHL KIH
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Region 72..94
1 YSCEVCGKSF IRAPDLKKHE RVH
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Region 100..122
1 FACHMCDKAF KHKSHLKDHE RRH
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Region 128..151
1 FVCGSCTKAF AKASDLKRHE NNMH
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- References
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Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
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