|
|
| -Genomic Data |
Links |
- Protein
- Hnf4a
|
- UniPROBE Accession Number
- UP00066
|
- Species
- Mus musculus
|
- Domain
- ZnF_C4
|
- Uniprot
-
P49698
|
- Name and Synonyms
-
hepatic nuclear factor 4, alpha
D19Mgi10, Hepatocyte nuclear factor 4-alpha, Hnf4, Hnf-4, HNF-4, HNF4 alpha, HNF-4-alpha, MODY1, Nr2a1, Nuclear receptor 2A1, Tcf14, Tcf4, Transcription factor 14, Transcription factor HNF-4
|
- IHOP
-
121714
|
- RefSeq
-
NP_032287
|
- Description
- Mus musculus hepatic nuclear factor 4, alpha (Hnf4a), mRNA
|
- JASPAR
-
MA0114
|
| -PBM Motif Data for Hnf4a |
- Primary Motif (Seed-And-Wobble)
-
|
- Primary PWM
-
View
Save
|
- Top Kmer
-
GGGGTCAA E.S. 0.495
TTGACCCC E.S. 0.495
|
- Secondary Motif (Seed-And-Wobble)
-
|
- Secondary PWM
-
View
Save
|
- Top Kmer
-
AAAGTCCA E.S. 0.497
TGGACTTT E.S. 0.497
|
-
Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH2640)
-
|
- PWM
-
View
|
- Consensus
-
NNNBRACYYN
NRRGTYVNNN
|
-
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2640)
-
|
- PWM
-
View
|
- Consensus
-
NNNBRACYYN
NRRGTYVNNN
|
- Downloads
-
Download the
zip
of all Hnf4a PBM files
or view the
downloads directory
for individual files.
|
- Link to TFBSshape
-
This link will take you to the corresponding entry for Hnf4a
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=66&sourceDB=uniprobe
|
| -Hnf4a Datasets |
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
|
pTH2640 |
#1 |
AMADID #016060 |
E. coli |
DNA binding domain only |
2014-08-13 |
|
|
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
|
pTH2640 |
#1 |
AMADID #015681 |
E. coli |
DNA binding domain only |
2014-08-13 |
|
|
- Clone pTH2640 insert sequence
- 1 PSEGANLNSS NSLGVSALCA ICGDRATGKH YGASSCDGCK GFFRRSVRKN
51 HMYSCRFSRQ CVVDKDKRNQ CRYCRLKKCF RAGMKKEAVQ NERDRISTRR
101 SSYEDSS
- DNA Binding Domains (Pfam) for clone 2640
-
Region 17..92
1 ALCAICGDRA TGKHYGASSC DGCKGFFRRS VRKNHMYSCR FSRQCVVDKD
51 KRNQCRYCRL KKCFRAGMKK EAVQNE
-
|
- References
-
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
|
|