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| -Genomic Data |
Links |
- Protein
- Foxa2
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- UniPROBE Accession Number
- UP00073
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- Species
- Mus musculus
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- Domain
- Fork_head
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- Uniprot
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P35583
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- Name and Synonyms
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forkhead box A2
Forkhead box protein A2, Hepatocyte nuclear factor 3-beta, Hnf3b, Hnf-3b, HNF-3B, HNF3beta, HNF3-beta, Tcf3b, Tcf-3b
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- IHOP
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121712
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- RefSeq
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NP_034576
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- Description
- Mus musculus forkhead box A2 (Foxa2)
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- JASPAR
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MA0047
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| -PBM Motif Data for Foxa2 |
- Primary Motif (Seed-And-Wobble)
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- Primary PWM
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View
Save
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- Top Kmer
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GTAAACAA E.S. 0.497
TTGTTTAC E.S. 0.497
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- Secondary Motif (Seed-And-Wobble)
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- Secondary PWM
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View
Save
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- Top Kmer
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AATAACA.A E.S. 0.445
T.TGTTATT E.S. 0.445
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Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH2830)
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- PWM
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View
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- Consensus
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NTRTKKRHNN
NNDYMMAYAN
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Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2830)
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- PWM
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View
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- Consensus
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NNTRTKKRHN
NDYMMAYANN
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- Downloads
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Download the
zip
of all Foxa2 PBM files
or view the
downloads directory
for individual files.
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- Link to TFBSshape
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This link will take you to the corresponding entry for Foxa2
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=73&sourceDB=uniprobe
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| -Foxa2 Datasets |
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH2830 |
#1 |
AMADID #016060 |
E. coli |
DNA binding domain only |
2014-08-13 |
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| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH2830 |
#1 |
AMADID #015681 |
E. coli |
DNA binding domain only |
2014-08-13 |
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- Clone pTH2830 insert sequence
- 1 LSRARDPKTY RRSYTHAKPP YSYISLITMA IQQSPNKMLT LSEIYQWIMD
51 LFPFYRQNQQ RWQNSIRHSL SFNDCFLKVP RSPDKPGKGS FWTLHPDSGN
101 MFENGCYLRR QKRFKCEKQL ALKEAAGA
- DNA Binding Domains (Pfam) for clone 2830
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Region 18..113
1 KPPYSYISLI TMAIQQSPNK MLTLSEIYQW IMDLFPFYRQ NQQRWQNSIR
51 HSLSFNDCFL KVPRSPDKPG KGSFWTLHPD SGNMFENGCY LRRQKR
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- References
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Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
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