-Genomic Data Links
Protein
Rfxdc2
UniPROBE Accession Number
UP00076
Species
Mus musculus
Domain
RFX
Uniprot
Q8CB07
Name and Synonyms
regulatory factor X domain containing 2 homolog (human)
2510005N23Rik, 9930116O05Rik, D130086K05Rik
IHOP
158715
RefSeq
NP_001028708
Description
AK138890
JASPAR
N/A
-PBM Motif Data for Rfxdc2
Primary Motif (Seed-And-Wobble)
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Primary PWM
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Top Kmer
C.TAGCAAC E.S. 0.497
GTTGCTA.G E.S. 0.497
Secondary Motif (Seed-And-Wobble)
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Secondary PWM
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Top Kmer
C.TGGATAC E.S. 0.484
GTATCCA.G E.S. 0.484
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH3516)
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PWM
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Consensus
BNYRGHDACV
BGTHDCYRNV
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH3516)
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PWM
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Consensus
NNYRRHDACV
BGTHDYYRNN
Downloads
Download the zip of all Rfxdc2 PBM files or view the downloads directory for individual files.
Link to TFBSshape
This link will take you to the corresponding entry for Rfxdc2 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=76&sourceDB=uniprobe

-Rfxdc2 Datasets
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH3516 #1 AMADID #016060 E. coli DNA binding domain only 2014-08-13 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH3516 #1 AMADID #015681 E. coli DNA binding domain only 2014-08-13 save search
Clone pTH3516 insert sequence
1    YLQLPSGLSS AEKSDQNAMS SSRAQQMHAF SWIRNTLEEH PETSLPKQEV
51   YDEYKSYCDN LGYHPLSAAD FGKIMKNVFP NMKARRLGTR GKSKYCYSGL
101  RKKAFVHMP

DNA Binding Domains (Pfam) for clone 3516
Region 16..94
1   QNAMSSSRAQ QMHAFSWIRN TLEEHPETSL PKQEVYDEYK SYCDNLGYHP
51  LSAADFGKIM KNVFPNMKAR RLGTRGKSK
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


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