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| -Genomic Data |
Links |
- Protein
- Tcfap2c
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- UniPROBE Accession Number
- UP00087
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- Species
- Mus musculus
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- Domain
- AP-2
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- Uniprot
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Q61312
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- Name and Synonyms
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transcription factor AP-2, gamma
AA409384, Activating enhancer-binding protein 2 gamma, Ap-2.2, AP-2.2, AP2-gamma, Tfap2c, Transcription factor AP-2 gamma
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- IHOP
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125391
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- RefSeq
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NP_033361
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- Description
- Mus musculus transcription factor AP-2, gamma, mRNA (cDNA clone MGC:5992 IMAGE:3592762), complete cds
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- JASPAR
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N/A
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| -PBM Motif Data for Tcfap2c |
- Primary Motif (Seed-And-Wobble)
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- Primary PWM
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View
Save
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- Top Kmer
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GCCT.AGGC E.S. 0.497
GCCT.AGGC E.S. 0.497
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- Secondary Motif (Seed-And-Wobble)
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- Secondary PWM
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View
Save
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- Top Kmer
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GCCC..GGGC E.S. 0.468
GCCC..GGGC E.S. 0.468
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Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH2912)
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- PWM
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View
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- Consensus
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SCYBVVGGCD
HGCCBBVRGS
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Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2912)
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- PWM
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View
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- Consensus
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SCCBVVGGSN
NSCCBBVGGS
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- Downloads
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Download the
zip
of all Tcfap2c PBM files
or view the
downloads directory
for individual files.
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- Link to TFBSshape
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This link will take you to the corresponding entry for Tcfap2c
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=87&sourceDB=uniprobe
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| -Tcfap2c Datasets |
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH2912 |
#1 |
AMADID #016060 |
E. coli |
DNA binding domain only |
2014-08-13 |
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| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH2912 |
#1 |
AMADID #015681 |
E. coli |
DNA binding domain only |
2014-08-13 |
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- Clone pTH2912 insert sequence
- 1 LGLPCQKDLV GVVMNPSEVF CSVPGRLSLL SSTSKYKVTV AEVQRRLSPP
51 ECLNASLLGG VLRRAKSKNG GRSLREKLDK IGLNLPAGRR KAAHVTLLTS
101 LVEGEAVHLA RDFAYVCEAE FPSKAVADYL TRPHLGGRNE MATRKSMLLA
151 AQQVCKEFTD LLHQDRTPNG NNRPAQVLEP NIQNCLSHFS LITHGFGSQA
201 ICAAVSAVQN YIKEALIAID KSYMNPGDQS PADSSKTME
- DNA Binding Domains (Pfam) for clone 2912
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Region 16..224
1 PSEVFCSVPG RLSLLSSTSK YKVTVAEVQR RLSPPECLNA SLLGGVLRRA
51 KSKNGGRSLR EKLDKIGLNL PAGRRKAAHV TLLTSLVEGE AVHLARDFAY
101 VCEAEFPSKA VADYLTRPHL GGRNEMATRK SMLLAAQQVC KEFTDLLHQD
151 RTPNGNNRPA QVLEPNIQNC LSHFSLITHG FGSQAICAAV SAVQNYIKEA
201 LIAIDKSYM
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- References
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Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
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