-Genomic Data Links
Protein
Tcf1
UniPROBE Accession Number
UP00089
Species
Mus musculus
Domain
Homeobox
Name and Synonyms
transcription factor 1
AI323641, hepatocyte nuclear factor 1, Hepatocyte nuclear factor 1-alpha, HNF1, Hnf-1, HNF1[a], Hnf1a, Hnf-1a, HNF-1A, Hnf1alpha, HNF1-alpha, LFB1, Liver-specific transcription factor LF-B1, Tcf-1
Description
Mus musculus transcription factor 1 (Tcf1), mRNA.
-PBM Motif Data for Tcf1
Primary Motif (Seed-And-Wobble)
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Primary PWM
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Top Kmer
GTTAACT.A E.S. 0.490
T.AGTTAAC E.S. 0.490
Secondary Motif (Seed-And-Wobble)
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Secondary PWM
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Top Kmer
G.C.GGATTA E.S. 0.475
TAATCC.G.C E.S. 0.475
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH2666)
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PWM
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Consensus
HTAACYNNNN
NNNNRGTTAD
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2666)
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PWM
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Consensus
NHWWAYHNNN
NNNDRTWWDN
Downloads
Download the zip of all Tcf1 PBM files or view the downloads directory for individual files.
Link to TFBSshape
This link will take you to the corresponding entry for Tcf1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=89&sourceDB=uniprobe

-Tcf1 Datasets
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH2666 #1 AMADID #016060 E. coli DNA binding domain only 2014-08-22 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH2666 #1 AMADID #015681 E. coli DNA binding domain only 2014-08-22 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH2666 #2 AMADID #016060 IVT DNA binding domain only 2014-08-22 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH2666 #2 AMADID #015681 IVT DNA binding domain only 2014-08-22 save search
Clone pTH2666 insert sequence
1    GLIEEPTGDE LPTKKGRRNR FKWGPASQQI LFQAYERQKS PSKEERETLV
51   EECNRAECIQ RGVSPSQAQG LGSNLVTEVR VYNWFANRRK EEAFRHKLAM
101  DTYNGPPPGP GPGP

DNA Binding Domains (Pfam) for clone 2666
Region 17..98
1   RRNRFKWGPA SQQILFQAYE RQKSPSKEER ETLVEECNRA ECIQRGVSPS
51  QAQGLGSNLV TEVRVYNWFA NRRKEEAFRH KL
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


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