-Genomic Data Links
Protein
Sox5
UniPROBE Accession Number
UP00091
Species
Mus musculus
Domain
HMG_box
Name and Synonyms
SRY-box containing gene 5
AI528773, MGC124352, Sox-5, Transcription factor SOX-5
Description
None Available
-PBM Motif Data for Sox5
Primary Motif (Seed-And-Wobble)
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Primary PWM
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Top Kmer
GAACAATA E.S. 0.489
TATTGTTC E.S. 0.489
Secondary Motif (Seed-And-Wobble)
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Secondary PWM
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Top Kmer
CATAATT.A E.S. 0.396
T.AATTATG E.S. 0.396
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH3459)
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PWM
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Consensus
NNNNVACAAT
ATTGTBNNNN
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH3459)
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PWM
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Consensus
NNNNNHVNNN
NNNBDNNNNN
Downloads
Download the zip of all Sox5 PBM files or view the downloads directory for individual files.
Link to TFBSshape
This link will take you to the corresponding entry for Sox5 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=91&sourceDB=uniprobe

-Sox5 Datasets
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH3459 #1 AMADID #016060 E. coli DNA binding domain only 2014-08-13 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH3459 #1 AMADID #015681 E. coli DNA binding domain only 2014-08-13 save search
Clone pTH3459 insert sequence
1    SRIYRESRGR GSNEPHIKRP MNAFMVWAKD ERRKILQAFP DMHNSNISKI
51   LGSRWKAMTN LEKQPYYEEQ ARLSKQHLEK YPDYKYKPRP KRTCLVDGKK
101  L

DNA Binding Domains (Pfam) for clone 3459
Region 17..85
1   IKRPMNAFMV WAKDERRKIL QAFPDMHNSN ISKILGSRWK AMTNLEKQPY
51  YEEQARLSKQ HLEKYPDYK
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


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