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| -Genomic Data |
Links |
- Protein
- Sox13
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- UniPROBE Accession Number
- UP00096
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- Species
- Mus musculus
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- Domain
- HMG_box
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- Uniprot
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Q04891
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- Name and Synonyms
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SRY-box containing gene 13
AA407916, AW259412, AW540933, Sox-13, SOX-13 protein
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- IHOP
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124774
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- RefSeq
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NP_035569
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- Description
- nuclear factor of kappa light polypeptide gene enhancer in B-cells 2, p49/p100, mRNA (cDNA clone MGC:35934 IMAGE:3672913), complete cds
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- JASPAR
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N/A
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| -PBM Motif Data for Sox13 |
- Primary Motif (Seed-And-Wobble)
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- Primary PWM
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View
Save
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- Top Kmer
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GAACAATA E.S. 0.479
TATTGTTC E.S. 0.479
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- Secondary Motif (Seed-And-Wobble)
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- Secondary PWM
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View
Save
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- Top Kmer
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GGGTGGG.A E.S. 0.412
T.CCCACCC E.S. 0.412
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Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH1718)
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- PWM
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View
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- Consensus
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NNNNHHVNNN
NNNBDDNNNN
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Motif (BEEML-PBM) (AMADID # 016060) (clone pTH1718)
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- PWM
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View
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- Consensus
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NNNNVRSCYB
VRGSYBNNNN
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- Downloads
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Download the
zip
of all Sox13 PBM files
or view the
downloads directory
for individual files.
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- Link to TFBSshape
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This link will take you to the corresponding entry for Sox13
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=96&sourceDB=uniprobe
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| -Sox13 Datasets |
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH1718 |
#1 |
AMADID #016060 |
E. coli |
DNA binding domain only |
2014-08-13 |
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| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH1718 |
#1 |
AMADID #015681 |
E. coli |
DNA binding domain only |
2014-08-13 |
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- Clone pTH1718 insert sequence
- 1 DMDGSRHFSE SRNSSHIKRP MNAFMVWAKD ERRKILQAFP DMHNSSISKI
51 LGSRWKSMTN QEKQPYYEEQ ARLSRQHLEK YPDYKYKPRP KRTCVVEGRR
101 L
- DNA Binding Domains (Pfam) for clone 1718
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Region 17..85
1 IKRPMNAFMV WAKDERRKIL QAFPDMHNSS ISKILGSRWK SMTNQEKQPY
51 YEEQARLSRQ HLEKYPDYK
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- References
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Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
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