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| -Genomic Data |
Links |
- Protein
- Mtf1
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- UniPROBE Accession Number
- UP00097
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- Species
- Mus musculus
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- Domain
- zf-C2H2
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- Uniprot
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Q07243
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- Name and Synonyms
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metal response element binding transcription factor 1
metalloregulatory transcription factor, Metal-regulatory transcription factor 1, metal response element-binding transcription factor 1, MRE-binding transcription factor, Mtf-1, Transcription factor MTF-1
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- IHOP
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122955
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- RefSeq
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NP_032662
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- Description
- Metal response element binding transcription factor 1
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- JASPAR
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N/A
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| -PBM Motif Data for Mtf1 |
- Primary Motif (Seed-And-Wobble)
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- Primary PWM
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View
Save
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- Top Kmer
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CGTGTGCA E.S. 0.495
TGCACACG E.S. 0.495
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- Secondary Motif (Seed-And-Wobble)
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- Secondary PWM
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View
Save
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- Top Kmer
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ATA.GAAA.A E.S. 0.403
T.TTTC.TAT E.S. 0.403
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Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH2377)
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- PWM
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View
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- Consensus
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SGDGYGCANN
NNTGCRCHCS
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Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2377)
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- PWM
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View
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- Consensus
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NNNNNNRNNN
NNNYNNNNNN
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- Downloads
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Download the
zip
of all Mtf1 PBM files
or view the
downloads directory
for individual files.
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- Link to TFBSshape
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This link will take you to the corresponding entry for Mtf1
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=97&sourceDB=uniprobe
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| -Mtf1 Datasets |
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH2377 |
#1 |
AMADID #015681 |
E. coli |
DNA binding domain only |
2014-08-13 |
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| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH2377 |
#1 |
AMADID #016060 |
E. coli |
DNA binding domain only |
2014-08-13 |
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- Clone pTH2377 insert sequence
- 1 LQSECPETKR KEVKRYQCTF EGCPRTYSTA GNLRTHQKTH RGEYTFVCNQ
51 EGCGKAFLTS YSLRIHVRVH TKEKPFECDV RGCEKAFNTL YRLKAHQRLH
101 TGKTFNCESQ GCSKYFTTLS DLRKHIRTHT GEKPFRCDHD GCGKAFAASH
151 HLKTHVRTHT GERPFFCPSN GCEKTFSTQY SLKSHMKGHD NKGTAYSALP
201 QHNG
- DNA Binding Domains (Pfam) for clone 2377
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Region 16..40
1 YQCTFEGCPR TYSTAGNLRT HQKTH
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Region 46..70
1 FVCNQEGCGK AFLTSYSLRI HVRVH
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Region 76..100
1 FECDVRGCEK AFNTLYRLKA HQRLH
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Region 105..129
1 FNCESQGCSK YFTTLSDLRK HIRTH
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Region 135..159
1 FRCDHDGCGK AFAASHHLKT HVRTH
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Region 165..189
1 FFCPSNGCEK TFSTQYSLKS HMKGH
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- References
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Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
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