-Genomic Data Links
Protein
Rfx3
UniPROBE Accession Number
UP00098
Species
Mus musculus
Domain
RFX
Name and Synonyms
regulatory factor X, 3 (influences HLA class II expression)
C230093O12Rik, MRFX3, Transcription factor RFX3
Description
None Available
-PBM Motif Data for Rfx3
Primary Motif (Seed-And-Wobble)
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Primary PWM
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Top Kmer
C.TAGCAAC E.S. 0.481
GTTGCTA.G E.S. 0.481
Secondary Motif (Seed-And-Wobble)
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Secondary PWM
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Top Kmer
C.TGGATAC E.S. 0.469
GTATCCA.G E.S. 0.469
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH3961)
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PWM
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Consensus
SNTRRHDACV
BGTHDYYANS
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH4970)
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PWM
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Consensus
GTTGCTAHGG
CCDTAGCAAC
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH4970)
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PWM
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Consensus
NYVGCRRBNH
DNVYYGCBRN
Downloads
Download the zip of all Rfx3 PBM files or view the downloads directory for individual files.
Link to TFBSshape
This link will take you to the corresponding entry for Rfx3 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=98&sourceDB=uniprobe

-Rfx3 Datasets
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH3961 #1 AMADID #016060 IVT DNA binding domain only 2014-08-13 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH3961 #1 AMADID #015681 IVT DNA binding domain only 2014-08-13 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH4970 #1 AMADID #016060 IVT Full length clone 2014-08-13 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH4970 #1 AMADID #015681 IVT Full length clone 2014-08-13 save search
Clone pTH3961 insert sequence
1    LISSSGGTYL IGNSMENSGH SVTHTTRASP ATLQWLLDNY ETAEGVSLPR
51   STLYNHYLRH CQEHKLDPVN AASFGKLIRS IFMGLRTRRL GTRGNSKYHY
101  YGIRVKPDSP LNR

DNA Binding Domains (Pfam) for clone 3961
Region 15..97
1   MENSGHSVTH TTRASPATLQ WLLDNYETAE GVSLPRSTLY NHYLRHCQEH
51  KLDPVNAASF GKLIRSIFMG LRTRRLGTRG NSK
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


Clone pTH4970 insert sequence
1    MQTSETGSDT GSTVTLQTSV ASQAAVPTQV VQQVPVQQQV QQVQTVQQVQ
51   HVYPAQVQYV EGSDTVYTNG AIRTTTYPYT ETQMYSQNTG GNYFDTQGSS
101  AQVTTVVSSH SMVGTGGIQM GVTGGQLISS SGGTYLIGNS MENSGHSVTH
151  TTRASPATIE MAIETLQKSD GLSTHRSSLL NSHLQWLLDN YETAEGVSLP
201  RSTLYNHYLR HCQEHKLDPV NAASFGKLIR SIFMGLRTRR LGTRGNSKYH
251  YYGIRVKPDS PLNRLQEDMQ YMAMRQQPMQ QKQRYKPMQK VDGVADGFTG
301  SGQQTGTSVG QTVIAQSQHH QQFLDASRAL PEFGEVEISS LPDGTTFEDI
351  KSLQSLYREH CEAILDVVVN LQFSLIEKLW QTFWRYSPST PTDGTTITES
401  RSESTSFPIH FHG

DNA Binding Domains (Pfam) for clone 4970
Not Available
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


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