Protein Details

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Genomic Data
PBM Motif Data
PBM Clones
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-Genomic Data				Links
Protein Rfx3	UniPROBE Accession Number UP00098	Species Mus musculus	Domain RFX	Uniprot P48381
Name and Synonyms regulatory factor X, 3 (influences HLA class II expression) C230093O12Rik, MRFX3, Transcription factor RFX3				IHOP 124248
				RefSeq NP_035395
Description None Available				JASPAR N/A

-PBM Motif Data for Rfx3
Primary Motif (Seed-And-Wobble)				Primary PWM View Save
Primary Motif (Seed-And-Wobble)				Top Kmer C.TAGCAAC E.S. 0.481 GTTGCTA.G E.S. 0.481
Secondary Motif (Seed-And-Wobble)				Secondary PWM View Save
Secondary Motif (Seed-And-Wobble)				Top Kmer C.TGGATAC E.S. 0.469 GTATCCA.G E.S. 0.469
Motif (BEEML-PBM) (AMADID # 015681) (clone pTH3961)				PWM View
Motif (BEEML-PBM) (AMADID # 015681) (clone pTH3961)				Consensus SNTRRHDACV BGTHDYYANS
Motif (BEEML-PBM) (AMADID # 015681) (clone pTH4970)				PWM View
Motif (BEEML-PBM) (AMADID # 015681) (clone pTH4970)				Consensus GTTGCTAHGG CCDTAGCAAC
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH4970)				PWM View
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH4970)				Consensus NYVGCRRBNH DNVYYGCBRN
Downloads Download the zip of all Rfx3 PBM files or view the downloads directory for individual files.
Link to TFBSshape This link will take you to the corresponding entry for Rfx3 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites. http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=98&sourceDB=uniprobe

-Rfx3 Datasets
Clone ID	Expression	Array Version	Expression Protocol	Clone Type	Last Modified	Save	View
pTH3961	#1	AMADID #016060	IVT	DNA binding domain only	2014-08-13
Clone ID	Expression	Array Version	Expression Protocol	Clone Type	Last Modified	Save	View
pTH3961	#1	AMADID #015681	IVT	DNA binding domain only	2014-08-13
Clone ID	Expression	Array Version	Expression Protocol	Clone Type	Last Modified	Save	View
pTH4970	#1	AMADID #016060	IVT	Full length clone	2014-08-13
Clone ID	Expression	Array Version	Expression Protocol	Clone Type	Last Modified	Save	View
pTH4970	#1	AMADID #015681	IVT	Full length clone	2014-08-13
Clone pTH3961 insert sequence `1 LISSSGGTYL IGNSMENSGH SVTHTTRASP ATLQWLLDNY ETAEGVSLPR 51 STLYNHYLRH CQEHKLDPVN AASFGKLIRS IFMGLRTRRL GTRGNSKYHY 101 YGIRVKPDSP LNR` DNA Binding Domains (Pfam) for clone 3961 Region 15..97 `1 MENSGHSVTH TTRASPATLQ WLLDNYETAE GVSLPRSTLY NHYLRHCQEH 51 KLDPVNAASF GKLIRSIFMG LRTRRLGTRG NSK`
References `Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009`
Clone pTH4970 insert sequence 1 MQTSETGSDT GSTVTLQTSV ASQAAVPTQV VQQVPVQQQV QQVQTVQQVQ 51 HVYPAQVQYV EGSDTVYTNG AIRTTTYPYT ETQMYSQNTG GNYFDTQGSS 101 AQVTTVVSSH SMVGTGGIQM GVTGGQLISS SGGTYLIGNS MENSGHSVTH 151 TTRASPATIE MAIETLQKSD GLSTHRSSLL NSHLQWLLDN YETAEGVSLP 201 RSTLYNHYLR HCQEHKLDPV NAASFGKLIR SIFMGLRTRR LGTRGNSKYH 251 YYGIRVKPDS PLNRLQEDMQ YMAMRQQPMQ QKQRYKPMQK VDGVADGFTG 301 SGQQTGTSVG QTVIAQSQHH QQFLDASRAL PEFGEVEISS LPDGTTFEDI 351 KSLQSLYREH CEAILDVVVN LQFSLIEKLW QTFWRYSPST PTDGTTITES 401 RSESTSFPIH FHG DNA Binding Domains (Pfam) for clone 4970 Not Available
References `Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009`