-Genomic Data for GFI1B Links
Protein
GFI1B
UniPROBE Accession Number
UP00592
Species
Homo sapiens
Domain
zf-C2H2
Name and Synonyms
Name: zinc finger protein Gfi-1b.
Synonyms:Growth factor independent protein 1B, Potential regulator of CDKN1A translocated in CML, Zinc finger protein Gfi-1b
Description
Essential proto-oncogenic transcriptional regulator necessary for development and differentiation of erythroid and megakaryocytic lineages. Component of a RCOR-GFI-KDM1A-HDAC complex that suppresses, via histone deacetylase (HDAC) recruitment, a number of genes implicated in multilineage blood cell development and controls hematopoietic differentiation. Transcriptional repressor or activator depending on both promoter and cell type context; represses promoter activity of SOCS1 and SOCS3 and thus, may regulate cytokine signaling pathways. Cooperates with GATA1 to repress target gene transcription, such as the apoptosis regulator BCL2L1; GFI1B silencing in leukemic cell lines markedly increase apoptosis rate. Inhibits down- regulation of MYC and MYB as well as the cyclin-dependent kinase inhibitor CDKN1A/P21WAF1 in IL6-treated myelomonocytic cells. Represses expression of GATA3 in T-cell lymphomas and inhibits GATA1-mediated transcription; as GATA1 also mediates erythroid GFI1B transcription, both GATA1 and GFI1B participate in a feedback regulatory pathway controlling the expression of GFI1B gene in erythroid cells. Suppresses GATA1-mediated stimulation of GFI1B promoter through protein interaction. Binds to gamma- satellite DNA and to its own promoter, auto-repressing its own expression. Alters histone methylation by recruiting histone methyltransferase to target genes promoters. Plays a role in heterochromatin formation.
-PBM Motif Data for GFI1B_REF_R2
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)
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PWM
Save
Top Kmer
AAATCTG..C E.S. 0.490
G..CAGATTT E.S. 0.490
Downloads
Download the zip of all GFI1B_REF PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
-PBM Motif Data for GFI1B_REF_R1
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)
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PWM
Save
Top Kmer
AAATCA.TG E.S. 0.485
CA.TGATTT E.S. 0.485
Downloads
Download the zip of all GFI1B_REF PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
-PBM Motif Data for GFI1B_A204T_R2
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)
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PWM
Save
Top Kmer
AAATCTG..C E.S. 0.492
G..CAGATTT E.S. 0.492
Downloads
Download the zip of all GFI1B_A204T PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
-PBM Motif Data for GFI1B_A204T_R1
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)
Image Not Available.  We apologize for the inconvenience.
PWM
Save
Top Kmer
AAATCAC.G E.S. 0.490
C.GTGATTT E.S. 0.490
Downloads
Download the zip of all GFI1B_A204T PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Download Data for GFI1B (all alleles)
Downloads
Download the zip of all GFI1B PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
-GFI1B Datasets
Clone Clone Type Last Modified Save View
GFI1B_REF DNA binding domain only search save
GFI1B_REF Insert Sequence
1    PGMDAYHCVK CNKVFSTPHG LEVHVRRSHS GTRPFACDIC GKTFGHAVSL
51   EQHTHVHSQE RSFECRMCGK AFKRSSTLST HLLIHSDTRP YPCQFCGKRF
101  HQKSDMKKHT YIHTGEKPHK CQVCGKAFSQ SSNLITHSRK HTGFKPFSCE
151  LCTKGFQRKV DLRRHRESQH NLK



GFI1B_A204T DNA binding domain only search save
GFI1B_A204T Insert Sequence
1    PGMDAYHCVK CNKVFSTPHG LEVHVRRSHS GTRPFACDIC GKTFGHTVSL
51   EQHTHVHSQE RSFECRMCGK AFKRSSTLST HLLIHSDTRP YPCQFCGKRF
101  HQKSDMKKHT YIHTGEKPHK CQVCGKAFSQ SSNLITHSRK HTGFKPFSCE
151  LCTKGFQRKV DLRRHRESQH NLK



References
Data are analyzed by array designs with AMADID #s 030236, 015681 in Barrera et al., Science 2016


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