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View All Genomic Data PBM Motif Data PBM Clones Minimize All

-Genomic Data for VSX1				Links
Protein VSX1	UniPROBE Accession Number UP00625	Species Homo sapiens	Domain Homeobox	Swiss-Prot Q9NZR4
Name and Synonyms Name: visual system homeobox 1. Synonyms:Homeodomain protein RINX, KTCN, PPCD, PPD, Retinal inner nuclear layer homeobox protein, RINX, Transcription factor VSX1, Visual system homeobox 1				IHOP 98925
Description The protein encoded by this gene contains a paired-like homeodomain and binds to the core of the locus control region of the red/green visual pigment gene cluster. The encoded protein may regulate expression of the cone opsin genes early in development. Mutations in this gene can cause posterior polymorphous corneal dystrophy and keratoconus. Alternatively spliced transcript variants encoding different isoforms have been described. [provided by RefSeq, Jul 2008]				NCBI RefSeq NP_001243200
VSX1 DNA binding domain 1   RRHRTVFTAH QLEELEKAFG EAHYPDVYAR EMLAAKTELP EDRIQVWFQN 51  RRAKWRK				JASPAR None Available

-PBM Motif Data for VSX1_REF_R1
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble) Reverse Complement (RC)				PWM Save
				Top Kmer CTAATTAG E.S. 0.499 CTAATTAG E.S. 0.499
Downloads Download the zip of all VSX1_REF PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.

-PBM Motif Data for VSX1_G160D_R1
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble) Reverse Complement (RC)				PWM Save
				Top Kmer CTAATTAG E.S. 0.499 CTAATTAG E.S. 0.499
Downloads Download the zip of all VSX1_G160D PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.

-PBM Motif Data for VSX1_Q175H_R1
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble) Reverse Complement (RC)				PWM Save
				Top Kmer G.TAATTA.C E.S. 0.499 G.TAATTA.C E.S. 0.499
Downloads Download the zip of all VSX1_Q175H PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.

-PBM Motif Data for VSX1_R166Q_R1
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble) Reverse Complement (RC)				PWM Save
				Top Kmer CTAATTAG E.S. 0.499 CTAATTAG E.S. 0.499
Downloads Download the zip of all VSX1_R166Q PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.

Download Data for VSX1 (all alleles)
Downloads Download the zip of all VSX1 PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.

-VSX1 Datasets
Clone	Clone Type	Last Modified	Save	View
VSX1_REF	DNA binding domain only
VSX1_REF Insert Sequence 1   NDLKASPTLG KRKKRRHRTV FTAHQLEELE KAFSEAHYPD VYAREMLAVK 51  TELPEDRIQV WFQNRRAKWR KREKRWGGSS VMAEYG
VSX1_G160D	DNA binding domain only
VSX1_G160D Insert Sequence 1   NDLKASPTLD KRKKRRHRTV FTAHQLEELE KAFSEAHYPD VYAREMLAVK 51  TELPEDRIQV WFQNRRAKWR KREKRWGGSS VMAEYG
VSX1_Q175H	DNA binding domain only
VSX1_Q175H Insert Sequence 1   NDLKASPTLG KRKKRRHRTV FTAHHLEELE KAFSEAHYPD VYAREMLAVK 51  TELPEDRIQV WFQNRRAKWR KREKRWGGSS VMAEYG
VSX1_R166Q	DNA binding domain only
VSX1_R166Q Insert Sequence 1   NDLKASPTLG KRKKRQHRTV FTAHQLEELE KAFSEAHYPD VYAREMLAVK 51  TELPEDRIQV WFQNRRAKWR KREKRWGGSS VMAEYG
References Data are analyzed by array designs with AMADID #s 030236, 015681 in Barrera et al., Science 2016