-Genomic Data for PAX3 Links
Protein
PAX3
UniPROBE Accession Number
UP01609
Species
Homo sapiens
Domain
PAX
Swiss-Prot
P23760
Name and Synonyms
Name: paired box protein Pax-3.
Synonyms:CDHS, HuP2, HUP2, MGC120381, MGC120382, MGC120383, MGC120384, MGC134778, Paired box protein Pax-3, WS1, WS3
IHOP
90831
NCBI RefSeq
NP_852122
Description
This gene is a member of the paired box (PAX) family of transcription factors. Members of the PAX family typically contain a paired box domain and a paired-type homeodomain. These genes play critical roles during fetal development. Mutations in paired box gene 3 are associated with Waardenburg syndrome, craniofacial-deafness-hand syndrome, and alveolar rhabdomyosarcoma. The translocation t(2;13)(q35;q14), which represents a fusion between PAX3 and the forkhead gene, is a frequent finding in alveolar rhabdomyosarcoma. Alternative splicing results in transcripts encoding isoforms with different C-termini.
JASPAR
None Available
-PBM Motif Data for PAX3_anti-GST
Primary Motif
Image Not Available. We apologize for the inconvenience.
Primary PWM
Save
Top Kmer
AATCGATT E.S. 0.496
AATCGATT E.S. 0.496
Secondary Motif
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Secondary PWM
Save
Top Kmer
ACCGTGAC E.S. 0.492
GTCACGGT E.S. 0.492
Downloads
Download the zip of all PAX3_anti-GST PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
-PBM Motif Data for PAX3_1B3
Primary Motif
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Primary PWM
Save
Top Kmer
AATCGATT E.S. 0.496
AATCGATT E.S. 0.496
Secondary Motif
Image Not Available. We apologize for the inconvenience.
Secondary PWM
Save
Top Kmer
CCC.ATTA.C E.S. 0.490
G.TAAT.GGG E.S. 0.490
Downloads
Download the zip of all PAX3_1B3 PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Download Data for PAX3
Downloads
Download the zip of all PAX3 PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
-PAX3 Datasets
Clone Clone Type Last Modified Save View
PAX3 Full length clone 2021-07-02 search save
PAX3 Insert Sequence
1    MTTLAGAVPR MMRPGPGQNY PRSGFPLEVS TPLGQGRVNQ LGGVFINGRP
51   LPNHIRHKIV EMAHHGIRPC VISRQLRVSH GCVSKILCRY QETGSIRPGA
101  IGGSKPKQVT TPDVEKKIEE YKRENPGMFS WEIRDKLLKD AVCDRNTVPS
151  VSSISRILRS KFGKGEEEEA DLERKEAEES EKKAKHSIDG ILSERASAPQ
201  SDEGSDIDSE PDLPLKRKQR RSRTTFTAEQ LEELERAFER THYPDIYTRE
251  ELAQRAKLTE ARVQVWFSNR RARWRKQAGA NQLMAFNHLI PGGFPPTAMP
301  TLPTYQLSET SYQPTSIPQA VSDPSSTVHR PQPLPPSTVH QSTIPSNPDS
351  SSAYCLPSTR HGFSSYTDSF VPPSGPSNPM NPTIGNGLSP QVMGLLTNHG
401  GVPHQPQTDY ALSPLTGGLE PTTTVSASCS QRLDHMKSLD SLPTSQSYCP
451  PTYSTTGYSM DPVTGYQYGQ YGQSAFHYLK PDIA


References
Data are analyzed by array design with AMADID # 030236 in Lai et al. 2020


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