-Genomic Data for Zscan10 Links
Protein
UniPROBE Accession Number
UP01404
Species
Mus musculus
Domain
zf-C2H2
Name and Synonyms
Name: Zinc finger and SCAN domain-containing protein 10.
Synonyms:Zinc finger and SCAN domains 10, BC068284, Zfp206, Zinc finger protein 206, Zkscan10, Znf206
Description
Embryonic stem (ES) cell-specific transcription factor required to maintain ES cell pluripotency. Can both activate and /or repress expression of target genes, depending on the context. Specifically binds the 5'-[GA]CGCNNGCG[CT]-3' DNA consensus sequence. Regulates expression of POU5F1/OCT4, ZSCAN4 and ALYREF/THOC4.
-PBM Motif Data for Zscan10
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)
GCACTC.CC
PWM
Save
Top Kmer
GCACTC.CC E.S. 0.492
GG.GAGTGC E.S. 0.492
Downloads
Download the zip of all Zscan10 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
-Zscan10 Datasets
Gene Clone Type Last Modified Save View
Zscan10 DNA binding domain only 2017-05-12 search save
Zscan10 Insert Sequence
1    VRGASDAPEP QGEMQFICTY CGVNFPEMSH LQAHQLQSHP NLQPHPSSRS
51   FRCLWCGKTF GRSSILKLHM RTHTDERPHA CHLCNRRFRQ SSHLTKHLLT
101  HSSEPAFRCA ECNQGFQRRS SLMQHLLAHA QGKNLTPNPE GKTKVPEMAA
151  VLCSHCGQTF KRRSSLKRHL RNHAKDKDHL SSEDPGSLSS SQESNPYVCS
201  DCGKAFRQSE QLMIHTRRVH TRERPFSCQV CGRCFTQNSQ LISHQQIHTG
251  EKPHACPQCS KRFVRRAGLA RHLLTHGSLR PYHCAQCGKS FRQMRDLTRH
301  VRCHTGEKPC RCNECGEGFT QNAHLARHQR IHTGEKPHAC DICGHRFRNS
351  SNLARHRRSH TGERPYSCPT CGRSFRRNAH LQRHLITHTG SKQEKEVPQE
401  CPECGKSFNR SCNLLRHLLV HTGARPYSCA LCGRSFSRNS HLLRHLRTHA
451  RESLY



References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Mariani et al., Cell Systems 2017


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