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| -Genomic Data for Oct-1 |
Links |
- Protein
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- UniPROBE Accession Number
- UP00399
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- Species
- Homo sapiens
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- Domain
- POU
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- Swiss-Prot
- P14859
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- Name and Synonyms
- Name: "POU domain, class 2, transcription factor 1".
Synonyms:"POU2F1, NF-A1, OCT1, Oct-1, Octamer-binding transcription factor 1, OTF1, OTF-1"
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- IHOP
- 91188
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- NCBI RefSeq
- NP_002688
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- Description
- "POU domain, class 2, transcription factor 1"
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- JASPAR
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None Available
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| -PBM Motif Data for Oct-1 |
- PBM-Derived DNA Binding Site Motif
(Seed-And-Wobble)
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- PWM
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Save
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- Top Kmer
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TATGCATA E.S. 0.498
TATGCATA E.S. 0.498
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- PBM-Derived DNA Binding Site Motif
(BEEML-PBM) (AMADID # 015681)
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- PWM
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Save
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- Consensus
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NNHWDMATDN
NHATKHWDNN
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- PBM-Derived DNA Binding Site Motif
(BEEML-PBM) (AMADID # 016060)
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- PWM
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Save
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- Consensus
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NWTWTKCANN
NNTGMAWAWN
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- Downloads
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Download the
zip
of all Oct-1 PBM files
or view the downloads directory for individual files.
Please note that the files which include probe sequence data are protected by an academic research use license,
which can be viewed here.
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- Link to TFBSshape
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This link will take you to the corresponding entry for Oct-1
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=399&sourceDB=uniprobe
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| -Oct-1 Datasets |
| Gene |
Clone Type |
Last Modified |
Save |
View |
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Oct-1 |
Full length clone |
2014-07-16 |
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- Oct-1 Insert Sequence
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1 MADGGAASQD ESSAAAAAAA DSRMNNPSET SKPSMESGDG NTGTQTNGLD
51 FQKQPVPVGG AISTAQAQAF LGHLHQVQLA GTSLQAAAQS LNVQSKSNEE
101 SGDSQQPSQP SQQPSVQAAI PQTQLMLAGG QITGLTLTPA QQQLLLQQAQ
151 AQAQLLAAAV QQHSASQQHS AAGATISASA ATPMTQIPLS QPIQIAQDLQ
201 QLQQLQQQNL NLQQFVLVHP TTNLQPAQFI ISQTPQGQQG LLQAQNLLTQ
251 LPQQSQANLL QSQPSITLTS QPATPTRTIA ATPIQTLPQS QSTPKRIDTP
301 SLEEPSDLEE LEQFAKTFKQ RRIKLGFTQG DVGLAMGKLY GNDFSQTTIS
351 RFEALNLSFK NMCKLKPLLE KWLNDAENLS SDSSLSSPSA LNSPGIEGLS
401 RRRKKRTSIE TNIRVALEKS FLENQKPTSE EITMIADQLN MEKEVIRVWF
451 CNRRQKEKRI NPPSSGGTSS SPIKAIFPSP TSLVATTPSL VTSSAATTLT
501 VSPVLPLTSA AVTNLSVTGT SDTTSNNTAT VISTAPPASS AVTSPSLSPS
551 PSASASTSEA SSASETSTTQ TTSTPLSSPL GTSQVMVTAS GLQTAAAAAL
601 QGAAQLPANA SLAAMAAAAG LNPSLMAPSQ FAAGGALLSL NPGTLSGALS
651 PALMSNSTLA TIQALASGGS LPITSLDATG NLVFANAGGA PNIVTAPLFL
701 NPQNLSLLTS NPVSLVSAAA ASAGNSAPVA SLHATSTSAE SIQNSLFTVA
751 SASGAASTTT TASKAQ
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- References
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Data are analyzed by array design with AMADID # in Berger et al., Nat Biotech 2006
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