-Genomic Data for Oct-1 Links
Protein
UniPROBE Accession Number
UP00399
Species
Homo sapiens
Domain
POU
Name and Synonyms
Name: "POU domain, class 2, transcription factor 1".
Synonyms:"POU2F1, NF-A1, OCT1, Oct-1, Octamer-binding transcription factor 1, OTF1, OTF-1"
Description
"POU domain, class 2, transcription factor 1"
-PBM Motif Data for Oct-1
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)
TATGCATA
PWM
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Top Kmer
TATGCATA E.S. 0.498
TATGCATA E.S. 0.498
PBM-Derived DNA Binding Site Motif (BEEML-PBM) (AMADID # 015681)
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PWM
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Consensus
NNHWDMATDN
NHATKHWDNN
PBM-Derived DNA Binding Site Motif (BEEML-PBM) (AMADID # 016060)
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PWM
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Consensus
NWTWTKCANN
NNTGMAWAWN
Downloads
Download the zip of all Oct-1 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Oct-1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=399&sourceDB=uniprobe

-Oct-1 Datasets
Gene Clone Type Last Modified Save View
Oct-1 Full length clone 2014-07-16 search save
Oct-1 Insert Sequence
1    MADGGAASQD ESSAAAAAAA DSRMNNPSET SKPSMESGDG NTGTQTNGLD
51   FQKQPVPVGG AISTAQAQAF LGHLHQVQLA GTSLQAAAQS LNVQSKSNEE
101  SGDSQQPSQP SQQPSVQAAI PQTQLMLAGG QITGLTLTPA QQQLLLQQAQ
151  AQAQLLAAAV QQHSASQQHS AAGATISASA ATPMTQIPLS QPIQIAQDLQ
201  QLQQLQQQNL NLQQFVLVHP TTNLQPAQFI ISQTPQGQQG LLQAQNLLTQ
251  LPQQSQANLL QSQPSITLTS QPATPTRTIA ATPIQTLPQS QSTPKRIDTP
301  SLEEPSDLEE LEQFAKTFKQ RRIKLGFTQG DVGLAMGKLY GNDFSQTTIS
351  RFEALNLSFK NMCKLKPLLE KWLNDAENLS SDSSLSSPSA LNSPGIEGLS
401  RRRKKRTSIE TNIRVALEKS FLENQKPTSE EITMIADQLN MEKEVIRVWF
451  CNRRQKEKRI NPPSSGGTSS SPIKAIFPSP TSLVATTPSL VTSSAATTLT
501  VSPVLPLTSA AVTNLSVTGT SDTTSNNTAT VISTAPPASS AVTSPSLSPS
551  PSASASTSEA SSASETSTTQ TTSTPLSSPL GTSQVMVTAS GLQTAAAAAL
601  QGAAQLPANA SLAAMAAAAG LNPSLMAPSQ FAAGGALLSL NPGTLSGALS
651  PALMSNSTLA TIQALASGGS LPITSLDATG NLVFANAGGA PNIVTAPLFL
701  NPQNLSLLTS NPVSLVSAAA ASAGNSAPVA SLHATSTSAE SIQNSLFTVA
751  SASGAASTTT TASKAQ



References
Data are analyzed by array design with AMADID # in Berger et al., Nat Biotech 2006


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