-Genomic Data for NSY-7 Links
Protein
UniPROBE Accession Number
UP00402
Species
C. elegans
Domain
Distant similarity to homeodomain
Name and Synonyms
Name: NSY-7.
Synonyms:C18F3.4, Q4PIU8_CAEEL
Description
Putative uncharacterized protein
-PBM Motif Data for NSY-7
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)
...ACCTTAAC...
PWM
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Top Kmer
...ACCTTAAC... E.S. 0.497
...GTTAAGGT... E.S. 0.497
PBM-Derived DNA Binding Site Motif (BEEML-PBM)
NNNCCTTADN
PWM
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Consensus
NNNCCTTADN
NHTAAGGNNN
Downloads
Download the zip of all NSY-7 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for NSY-7 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=402&sourceDB=uniprobe

-NSY-7 Datasets
Gene Clone Type Last Modified Save View
NSY-7 Full length clone 2014-08-13 search save
NSY-7 Insert Sequence
1    MSSDTKYKYA VVRIPETSVV DFFSLIVAKG YSDVSFVASL SQCNLRDDPN
51   DDQPTTSSNS VKESINDDES NSENNKLSPP RRQSNPHSSL PAISSSTVKN
101  EPTDSWTPSA LSNDPTPDLL SATVPAELLT NLFAKTKSTE PKPQQLFGFQ
151  ASGVDFDLSN NEWHENLRLP NGNGTEKYHP YGGNSKNDSP LQTRMKGWQR
201  EYIKEVIKDS HYPTEEELRD IEQKCDLSRK QILRFIAKRL TNPNRKPRVN
251  HHDEKRKEQE ERDSLADPDD DMINDNEAVT NLHHILNSLQ ETTA



References
Data are analyzed by array design with AMADID # 016060 in Lesch et al., Genes Dev 2009


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